Macha Nikolski

14/03 Human and viral genomics of infections

In this talk Vincent Pedergnana will present results from his research on hepatitis C virus and dengue virus using novel biostatistical approaches.

Seminars

29/11 Phyloformer: towards fast and accurate phylogeny estimation with self-attention networks

Seminar by Laurent Jacob (CNRS Lyon) "Phyloformer: towards fast and accurate phylogeny estimation with self-attention networks"

Seminars

8/11 - Fridolin Gross: Predicting microRNA targets using a biochemical model combined with machine learning

In this seminar Fridolin Gross will present his work on predicting microRNA targets using a biochemical model combined with machine learning

Machine Learning for antimicrobial resistance (AMR) prediction

Ulysse Guyet will be giving a talk titled "ARSENAL: Antimicrobial ReSistance prEdictioN by mAchine Learning approach" at the ML Microbial Genomics workshop on Friday 23/09.

Seminars

31/05 - Kateryna Makova: Explaining and predicting disease occurrence from omics data

In this seminar, Pr. Kateryna Makova from Penn State University will present her work on the prediction of disease occurrence from omics data at the Computational Biology and Bioinformatics Lab in Bordeaux

Projects

Exploiting innate immunity of hepatocellular carcinoma to improve patients treatment

Analysis of HCC tumour etiology based on multi-omic datasets including scRNAseq, spatial scRNAseq, bulk RNAseq and 16S microbiome sequencing

Projects

Tumoral heterogeneity and multi-omics data integration

Tumour heterogeneity analysis by deconvolution and multi-omic data integration to elucidate cancer phenotypes

Team

À propos de l'équipe de bio-informatique et de biologie computationelle de Bordeaux

Permettre la convergence entre "l'imagerie microscopique" et les "omiques" à travers la biologie computationelle

Seminars

12/04 - Samuel Chaffron (Tara Oceans) : Les Modèles De Réseau De Plancton

Présentation de SAMUEL CHAFFRON au Computational Biology and Bioinformatics Lab de bordeaux sur la communauté microbienne dans l'océan mondial

Seminars

22/03 - Laurent Tichit (IMM) : Random Walk with Restart on Multilayer Biological Networks

In this seminar, Dr. Laurent Tichit from Université D’aix-Marseille will present his work on random walk with restart on multilayer biological networks at Computational Biology and Bioinformatics Lab in Bordeaux

Team

Lab Publications

List of our recent publications

Seminars

01/03 - Emilien Peltier (ISVV) : Inheritance, Phenotypic Variation, And Missing Heritability Hidden Behind The Mitochondrial Genome

Seminars

18/01 - Clémence Frioux (PLEIADE) : Modélisation discrète du métabolisme, des organismes individuels aux écosystèmes microbiens

In this seminar, Clémence FRIOUX from the INRIA research team PLEIADE will present her work on Discrete modeling of metabolism, from individual organisms to microbial ecosystems at the Computational Biology and Bioinformatics Lab in Bordeaux

Team

New member: Slim Karkar

Slim is the latest addition to the CB&B Team. How did you come to choose your area of research? > I came to work in bioinformatics because I wanted to apply my computer skills to biomedical and life science. The human genome project was an amazing scientific step

Publications

DypFISH

Dynamic Patterned FISH to Interrogate RNA and Protein Spatial and Temporal Subcellular Distribution > Anca F. Savulescu, Robyn Brackin, Emmanuel Bouilhol, Benjamin Dartigues, Jonathan H. Warrell, Mafalda R. Pimentel, Nicolas Beaume, Isabela C. Fortunato, Stephane Dallongeville, Mikaël Boulle, Hayssam Soueidan, Fabrice Agou, Jan Schmoranzer, Jean-Christophe Olivo-Marin, Claudio A. Franco, Edgar

Team

About us

Computational Biology and Bioinformatics is an interdisciplinary team at the CNRS institute in Bordeaux focused on multi-omics and imaging data integration. Our two main pillars are 1) Tackling real biological problems and 2) Combining different areas of technical expertise ...